PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022252.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 642aa    MW: 71109.6 Da    PI: 4.7328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022252.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102302701055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Do022252.1 230 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 270
                 9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13224282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-12225280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-11229274No hitNo description
PfamPF000101.1E-7230270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0034227Biological ProcesstRNA thio-modification
GO:0016783Molecular Functionsulfurtransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MEAGGLITEV GWTEFDFLSH GEESEVMAQL LGAFPSHGEE VLQELPWSNQ ASNVFSDNIG  60
SSLAVPPAYE GYYLSNSNEA LRISSCIAPD DLSSVQQYGP TEFFNKFSNH SLNFYGNGDR  120
SCEDLDDPSM SMLDSVSATN KRKQLAEELD GQTRGRKCAR KGEIKRTKRA KQRGDEDASM  180
AIASGSPTSC CTSESDSNAS LESADADARP KGKARAACGA TTEPQSIYAR KRRERINERL  240
KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMVALQFIH EMQSKAIQSW  300
ETSNSQAQPA FGVGVAFVDE SVLLARAEHE TETATEDIKS IVSSLSPGDK QVHVAPLEDA  360
FSCGSEDKAA RLKEVVSMIN DETGRDDFIR CLRMLSLQKI ALENGYTKIM LGTCASGIAC  420
HVLSATVKGQ GYSLPADVQY VDTRWEVPVV LPLHDCLAQE LSLLCELDSL KTQQLLDRPC  480
SGINSLVASF VSRLREENPS REHTILRTAQ KLKPFSFNKF SANGYHDFLP SRLRPKFQNV  540
DTNESTFSEI LCLICGSPFS ESELQNLENT KHKAQNKIDL YTAHCCQSCH FQILPAATDT  600
NEHFLSLLPK FWTEKVDTAS ASHSSLRDQI EDCLLEDDDD EN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647650.0EU964765.1 Zea mays clone 281436 hypothetical protein mRNA, complete cds.
GenBankEU9693830.0EU969383.1 Zea mays clone 329498 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963030.20.0PREDICTED: cytoplasmic tRNA 2-thiolation protein 2
SwissprotA2ZM730.0CTU2_ORYSI; Cytoplasmic tRNA 2-thiolation protein 2
SwissprotQ2QMW00.0CTU2_ORYSJ; Cytoplasmic tRNA 2-thiolation protein 2
TrEMBLK3Z6160.0K3Z616_SETIT; Cytoplasmic tRNA 2-thiolation protein 2
STRINGSi021984m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-39ROOT HAIR DEFECTIVE 6-LIKE 2